Hello,
I'm not hugely knowledgeable on the effectiveness of CT vs. MRI, but I have heard it definitely makes a difference in what organ is being looked at, and what they're wanting to try to see. I have/had (am now considered with no active disease) rectal cancer w/ mets to liver and lungs & recently went through a liver resection. I am just about to have my first follow up scans since my surgery. My oncologist originally said I'd have a neck to thighs CT scan. My liver specialist & colorectal specialist, however, both said an MRI is better for viewing the liver and the colon/rectum than a CT scan is. To look at my lungs, however, they both agreed that I should still have the CT scan for that. My colorectal surgeon's words were: "There are two reasons I'd rather you have the MRI for the abdomen and pelvis... 1) An MRI doesn't have all the radiation like the CT does & 2) The MRI gives a clearer picture of the liver and colon. She again stated I still should get the CT for my chest, because it gives a better picture of the lungs.
I think doing a one time CT of everything is probably easier to keep track of & my oncologist also said "some patients don't like getting the MRI because it's a worse experience with the noise and going in the tunnel". I replied I didn't care about that, that I just want what will give me the best picture of what's going on inside me!
I'd talk these points over with your doctor. Best wishes-
Lisa